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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RUNX1
wikigenes
PDBj
CellType: CD34+
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX062339
GSM722708: RUNX1 non-t(8;21) ChIPSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RUNX1
Cell type
Cell type Class
Blood
Cell type
CD34+
NA
NA
Attributes by original data submitter
Sample
source_name
Peripheral blood MNC CD34+ from non-t(8;21)AML patient
cell type
Peripheral blood MNC CD34+
target
RUNX1
antibody
ab23980 (lot number728911)
Sequenced DNA Library
library_name
GSM722708: RUNX1_non-t(8;21)_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
37707840
Reads aligned (%)
97.2
Duplicates removed (%)
7.5
Number of peaks
40625 (qval < 1E-05)
hg19
Number of total reads
37707840
Reads aligned (%)
96.6
Duplicates removed (%)
8.5
Number of peaks
40563 (qval < 1E-05)
Base call quality data from
DBCLS SRA