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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RUNX1
wikigenes
PDBj
CellType: Kasumi-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX062337
GSM722706: RUNX1ETO siMM ChIPSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RUNX1
Cell type
Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous
Attributes by original data submitter
Sample
source_name
Kasumi-1 transfection with mismatch siRNA
cell type
Kasumi-1
target
RUNX1/ETO
antibody
ETO(C20)sc (lot number F1809)
Sequenced DNA Library
library_name
GSM722706: RUNX1ETO_siMM_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
18505754
Reads aligned (%)
75.2
Duplicates removed (%)
7.8
Number of peaks
3974 (qval < 1E-05)
hg38
Number of total reads
18505754
Reads aligned (%)
76.5
Duplicates removed (%)
6.8
Number of peaks
3953 (qval < 1E-05)
Base call quality data from
DBCLS SRA