SRX062337
GSM722706: RUNX1ETO siMM ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Kasumi-1 transfection with mismatch siRNA
cell type
Kasumi-1
target
RUNX1/ETO
antibody
ETO(C20)sc (lot number F1809)

Sequenced DNA Library

library_name
GSM722706: RUNX1ETO_siMM_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
18505754
Reads aligned (%)
75.2
Duplicates removed (%)
7.8
Number of peaks
3974 (qval < 1E-05)

hg38

Number of total reads
18505754
Reads aligned (%)
76.5
Duplicates removed (%)
6.8
Number of peaks
3953 (qval < 1E-05)

Base call quality data from DBCLS SRA