SRX061988
GSM721134: HCC1954: chromatin IP against H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
HCC1954
Primary Tissue
Breast
Site of Extraction
Soft Tissue
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
breast cancer cells
cell line
HCC1954
cell type
breast cancer cells
chip antibody
H3K4me3, cat #CS200580, lot #DAM1612220

Sequenced DNA Library

library_name
GSM721134: HCC1954: chromatin IP against H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20641336
Reads aligned (%)
79.0
Duplicates removed (%)
13.6
Number of peaks
32593 (qval < 1E-05)

hg19

Number of total reads
20641336
Reads aligned (%)
78.7
Duplicates removed (%)
14.2
Number of peaks
32699 (qval < 1E-05)

Base call quality data from DBCLS SRA