Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Breast
Cell type
HCC1954
Primary Tissue
Breast
Site of Extraction
Soft Tissue
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
breast cancer cells
cell line
HCC1954
cell type
breast cancer cells
chip antibody
H3K4me1, catalog #ab8895-50, lot #720417

Sequenced DNA Library

library_name
GSM721133: HCC1954: chromatin IP against H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
33451391
Reads aligned (%)
76.6
Duplicates removed (%)
3.2
Number of peaks
31831 (qval < 1E-05)

hg19

Number of total reads
33451391
Reads aligned (%)
76.2
Duplicates removed (%)
3.8
Number of peaks
31797 (qval < 1E-05)

Base call quality data from DBCLS SRA