SRX061976
GSM721215: H3K4me3 mLSC ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
Granulocytic-monocytic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
murine L-GMP
strain
C57BL/6
genotype
MLL-AF9
cell origin
MLL-AF9 Leukemic Stem Cell (IL-7R-Lin-Sca-1-c-Kit+CD34+FcgammaII/III+) from GMP-derived leukemia
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM721215: H3K4me3_mLSC_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8067716
Reads aligned (%)
88.4
Duplicates removed (%)
10.0
Number of peaks
10194 (qval < 1E-05)

mm9

Number of total reads
8067716
Reads aligned (%)
88.2
Duplicates removed (%)
10.3
Number of peaks
10251 (qval < 1E-05)

Base call quality data from DBCLS SRA