Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells, untreated, p300 ChIP
cell line
MCF-7
cell type
breast cancer cells
treatment
none
chip antibody
p300
antibody vendor
Santa Cruz
antibody catalog number
sc-584
antibody lot number
D0506

Sequenced DNA Library

library_name
GSM720425: p300 sequencing in non-treated (DMSO as vehicle) MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
22007325
Reads aligned (%)
88.1
Duplicates removed (%)
6.1
Number of peaks
900 (qval < 1E-05)

hg38

Number of total reads
22007325
Reads aligned (%)
89.6
Duplicates removed (%)
5.2
Number of peaks
599 (qval < 1E-05)

Base call quality data from DBCLS SRA