SRX060812
GSM720424: p300 sequencing in estradiol (E2) treated MCF-7 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells, E2-treated, p300 ChIP
cell line
MCF-7
cell type
breast cancer cells
treatment
estradiol (E2)
chip antibody
p300
antibody vendor
Santa Cruz
antibody catalog number
sc-584
antibody lot number
D0506

Sequenced DNA Library

library_name
GSM720424: p300 sequencing in estradiol (E2) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18327823
Reads aligned (%)
86.0
Duplicates removed (%)
6.6
Number of peaks
748 (qval < 1E-05)

hg19

Number of total reads
18327823
Reads aligned (%)
85.2
Duplicates removed (%)
7.5
Number of peaks
892 (qval < 1E-05)

Base call quality data from DBCLS SRA