Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells, untreated, GATA3 ChIP
cell line
MCF-7
cell type
breast cancer cells
treatment
none
chip antibody
GATA3
antibody vendor
Santa Cruz
antibody catalog number
sc-22206X
antibody lot number
D0909

Sequenced DNA Library

library_name
GSM720423: GATA3 sequencing in non-treated (DMSO as vehicle) MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
20050055
Reads aligned (%)
87.2
Duplicates removed (%)
8.1
Number of peaks
8513 (qval < 1E-05)

hg38

Number of total reads
20050055
Reads aligned (%)
89.3
Duplicates removed (%)
6.6
Number of peaks
8220 (qval < 1E-05)

Base call quality data from DBCLS SRA