Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells, E2-treated, GATA3 ChIP
cell line
MCF-7
cell type
breast cancer cells
treatment
estradiol (E2)
chip antibody
GATA3
antibody vendor
Santa Cruz
antibody catalog number
sc-22206X
antibody lot number
D0909

Sequenced DNA Library

library_name
GSM720422: GATA3 sequencing in estradiol (E2) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
28236567
Reads aligned (%)
88.9
Duplicates removed (%)
6.5
Number of peaks
21408 (qval < 1E-05)

hg38

Number of total reads
28236567
Reads aligned (%)
91.1
Duplicates removed (%)
5.1
Number of peaks
20636 (qval < 1E-05)

Base call quality data from DBCLS SRA