Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EZH2

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP prostate cancer cells, 2hr ETOH treated, EZH2 ChIP DNA
cell line
VCaP
cell type
prostate cancer cells
treatment
ETOH
treatment duration
2hr
chip antibody
anti-EZH2
antibody vendor
Active Motif
antibody catalog number
39933

Sequenced DNA Library

library_name
GSM717404: EZH2 ChIP sequencing in 2hr ETOH treated VCaP cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
36480250
Reads aligned (%)
86.1
Duplicates removed (%)
5.3
Number of peaks
1980 (qval < 1E-05)

hg38

Number of total reads
36480250
Reads aligned (%)
87.8
Duplicates removed (%)
4.1
Number of peaks
1934 (qval < 1E-05)

Base call quality data from DBCLS SRA