SRX059713
GSM717402: HDAC3 ChIP sequencing in 2hr ETOH treated VCaP cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC3

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP prostate cancer cells, 2hr ETOH treated, HDAC3 ChIP DNA
cell line
VCaP
cell type
prostate cancer cells
treatment
ETOH
treatment duration
2hr
chip antibody
anti-HDAC3
antibody vendor
Santa Cruz
antibody catalog number
sc-11417

Sequenced DNA Library

library_name
GSM717402: HDAC3 ChIP sequencing in 2hr ETOH treated VCaP cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47439457
Reads aligned (%)
66.6
Duplicates removed (%)
10.6
Number of peaks
4425 (qval < 1E-05)

hg19

Number of total reads
47439457
Reads aligned (%)
65.9
Duplicates removed (%)
11.5
Number of peaks
4606 (qval < 1E-05)

Base call quality data from DBCLS SRA