Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP prostate cancer cells, 0hr treated, ERG ChIP DNA
cell line
VCaP
cell type
prostate cancer cells
treatment
none
treatment duration
0hr
chip antibody
anti-ERG
antibody vendor
Santa Cruz
antibody catalog number
sc-353

Sequenced DNA Library

library_name
GSM717395: ERG ChIP sequencing in 0hr treated VCaP cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
18592769
Reads aligned (%)
85.2
Duplicates removed (%)
4.4
Number of peaks
14137 (qval < 1E-05)

hg38

Number of total reads
18592769
Reads aligned (%)
87.0
Duplicates removed (%)
3.1
Number of peaks
14038 (qval < 1E-05)

Base call quality data from DBCLS SRA