SRX059703
GSM717392: AR ChIP sequencing in 0hr treated VCaP cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP prostate cancer cells, 0hr treated, AR ChIP DNA
cell line
VCaP
cell type
prostate cancer cells
treatment
none
treatment duration
0hr
chip antibody
anti-AR
antibody vendor
Santa Cruz
antibody catalog number
sc-815x

Sequenced DNA Library

library_name
GSM717392: AR ChIP sequencing in 0hr treated VCaP cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17192727
Reads aligned (%)
89.7
Duplicates removed (%)
4.4
Number of peaks
2945 (qval < 1E-05)

hg19

Number of total reads
17192727
Reads aligned (%)
88.8
Duplicates removed (%)
5.6
Number of peaks
3018 (qval < 1E-05)

Base call quality data from DBCLS SRA