SRX059702
GSM717391: VCaP Genomic Input sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP prostate cancer cells, input
cell line
VCaP
cell type
prostate cancer cells
treatment
none
chip antibody
none

Sequenced DNA Library

library_name
GSM717391: VCaP Genomic Input sequencing
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16775051
Reads aligned (%)
91.5
Duplicates removed (%)
1.8
Number of peaks
924 (qval < 1E-05)

hg19

Number of total reads
16775051
Reads aligned (%)
90.7
Duplicates removed (%)
2.9
Number of peaks
807 (qval < 1E-05)

Base call quality data from DBCLS SRA