Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP4

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP prostate cancer cells
chip antibody
AP4
cell type
androgen-dependent prostate cancer cells

Sequenced DNA Library

library_name
GSM714610: AP4 ChIP sequencing in DHT (5alpha-dihydrotestosterone) treated LNCaP cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
14537873
Reads aligned (%)
82.1
Duplicates removed (%)
9.1
Number of peaks
3605 (qval < 1E-05)

hg38

Number of total reads
14537873
Reads aligned (%)
84.0
Duplicates removed (%)
7.8
Number of peaks
3587 (qval < 1E-05)

Base call quality data from DBCLS SRA