SRX059373
GSM701863: E2F6 K562 ChIP-seq rep2 lane 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
E2F6

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia cell line
cell-type
K562 cell line
harvest date
06/12/08
chip antibody
rabbit anti-E2F6 (Santa Cruz Biotechnology, catalog# sc-22823x)

Sequenced DNA Library

library_name
GSM701863: E2F6_K562_ChIP-seq_rep2 lane 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
35614399
Reads aligned (%)
22.0
Duplicates removed (%)
5.5
Number of peaks
13924 (qval < 1E-05)

hg38

Number of total reads
35614399
Reads aligned (%)
22.1
Duplicates removed (%)
5.2
Number of peaks
13948 (qval < 1E-05)

Base call quality data from DBCLS SRA