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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: L3MBTL2
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX059372
GSM701861: L3MBTL2 K562 ChIP-seq rep2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
L3MBTL2
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
source_name
chronic myeloid leukemia cell line
cell-type
K562 cell line
harvest date
2008-06-05
chip antibody
rabbit anti L3MBTL2 (Danny Reinberg's lab)
Sequenced DNA Library
library_name
GSM701861: L3MBTL2_K562_ChIP-seq_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
2874531
Reads aligned (%)
46.8
Duplicates removed (%)
2.6
Number of peaks
109 (qval < 1E-05)
hg19
Number of total reads
2874531
Reads aligned (%)
46.6
Duplicates removed (%)
2.7
Number of peaks
116 (qval < 1E-05)
Base call quality data from
DBCLS SRA