SRX059371
GSM701860: L3MBTL2 K562 ChIP-seq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
L3MBTL2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia cell line
cell-type
K562 cell line
harvest date
2008-06-12
chip antibody
rabbit anti L3MBTL2 (Danny Reinberg's lab)

Sequenced DNA Library

library_name
GSM701860: L3MBTL2_K562_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27878646
Reads aligned (%)
69.4
Duplicates removed (%)
1.1
Number of peaks
466 (qval < 1E-05)

hg19

Number of total reads
27878646
Reads aligned (%)
68.8
Duplicates removed (%)
2.2
Number of peaks
678 (qval < 1E-05)

Base call quality data from DBCLS SRA