SRX059365
GSM714809: NCC H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural crests
NA
NA

Attributes by original data submitter

Sample

source_name
NCC_H3K4me3
cell type
Neural crest cells (hNCC) derived from H9 ESC
chip antibody
H3K4me3 (39159, Active Motif)

Sequenced DNA Library

library_name
GSM714809: NCC_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23287354
Reads aligned (%)
79.7
Duplicates removed (%)
8.0
Number of peaks
22557 (qval < 1E-05)

hg19

Number of total reads
23287354
Reads aligned (%)
79.3
Duplicates removed (%)
8.6
Number of peaks
22619 (qval < 1E-05)

Base call quality data from DBCLS SRA