Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural crests
NA
NA

Attributes by original data submitter

Sample

source_name
NCC_H3K4me1
cell type
Neural crest cells (hNCC) derived from H9 ESC
chip antibody
H3K4me1 (ab8895, Abcam)

Sequenced DNA Library

library_name
GSM714808: NCC_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
20303767
Reads aligned (%)
86.0
Duplicates removed (%)
2.3
Number of peaks
1662 (qval < 1E-05)

hg19

Number of total reads
20303767
Reads aligned (%)
85.7
Duplicates removed (%)
2.7
Number of peaks
1724 (qval < 1E-05)

Base call quality data from DBCLS SRA