SRX059360
GSM714804: NCC p300

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural crests
NA
NA

Attributes by original data submitter

Sample

source_name
NCC_p300
cell type
Neural crest cells (hNCC) derived from H9 ESC
chip antibody
p300 (sc-585, Santa Cruz Biotechnology)

Sequenced DNA Library

library_name
GSM714804: NCC_p300
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19767502
Reads aligned (%)
88.9
Duplicates removed (%)
7.3
Number of peaks
8504 (qval < 1E-05)

hg19

Number of total reads
19767502
Reads aligned (%)
88.1
Duplicates removed (%)
9.0
Number of peaks
8401 (qval < 1E-05)

Base call quality data from DBCLS SRA