Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: efl-1
wikigenes
PDBj
CellType: L3
ATCC
MeSH
RIKEN BRC
SRX059253
GSM713148: seq-SDQ3590 EFL1 N2 L3 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
efl-1
Cell type
Cell type Class
Larvae
Cell type
L3
NA
NA
Attributes by original data submitter
Sample
source_name
whole body
tissue
whole body
strain
N2
Stage
L3
chip antibody
SDQ3590 EFL1
chip antibody supplier
SDI
Sequenced DNA Library
library_name
GSM713148: seq-SDQ3590_EFL1_N2_L3_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
ce10
Number of total reads
17674323
Reads aligned (%)
73.8
Duplicates removed (%)
22.4
Number of peaks
2085 (qval < 1E-05)
ce11
Number of total reads
17674323
Reads aligned (%)
73.8
Duplicates removed (%)
22.4
Number of peaks
2098 (qval < 1E-05)
Base call quality data from
DBCLS SRA