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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: sdc-3
wikigenes
PDBj
CellType: L3
ATCC
MeSH
RIKEN BRC
SRX059243
GSM713142: seq-JL00002 SDC3 N2 L3 3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
sdc-3
Cell type
Cell type Class
Larvae
Cell type
L3
NA
NA
Attributes by original data submitter
Sample
source_name
whole body
tissue
whole body
strain
N2
Stage
L3
chip antibody
JL00002 SDC3
chip antibody supplier
Covance
Sequenced DNA Library
library_name
GSM713142: seq-JL00002_SDC3_N2_L3_3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
7751700
Reads aligned (%)
87.4
Duplicates removed (%)
37.9
Number of peaks
1056 (qval < 1E-05)
ce10
Number of total reads
7751700
Reads aligned (%)
87.4
Duplicates removed (%)
37.9
Number of peaks
1056 (qval < 1E-05)
Base call quality data from
DBCLS SRA