SRX058656
GSM714699: Gingeras K562 10k (Illumina)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
GIS
lab description
Ruan - Genome Institute of Singapore
datatype
DnaPet
datatype description
DNA Paired-End Tags
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell lineage
mesoderm
fragsize
10k
fragsize description
10 kb DNA fragments

Sequenced DNA Library

library_name
GSM714699: Gingeras_K562_10k (Illumina)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
81513946
Reads aligned (%)
91.3
Duplicates removed (%)
36.4
Number of peaks
480 (qval < 1E-05)

hg19

Number of total reads
81513946
Reads aligned (%)
90.8
Duplicates removed (%)
36.9
Number of peaks
240 (qval < 1E-05)

Base call quality data from DBCLS SRA