SRX057745
GSM706675: mES Input for 5hmC

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES cells, input
cell line
E14
cell type
mouse embryonic stem (MES) cells
shrna treatment
none
antibody
none

Sequenced DNA Library

library_name
GSM706675: mES_Input_for_5hmC
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22021542
Reads aligned (%)
90.1
Duplicates removed (%)
8.5
Number of peaks
491 (qval < 1E-05)

mm9

Number of total reads
22021542
Reads aligned (%)
89.9
Duplicates removed (%)
8.6
Number of peaks
416 (qval < 1E-05)

Base call quality data from DBCLS SRA