SRX057743
GSM706673: mES Input for TET1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES cells, input
cell line
J1
cell type
mouse embryonic stem (MES) cells
shrna treatment
none
antibody
none

Sequenced DNA Library

library_name
GSM706673: mES_Input_for_TET1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16181805
Reads aligned (%)
88.3
Duplicates removed (%)
42.4
Number of peaks
737 (qval < 1E-05)

mm9

Number of total reads
16181805
Reads aligned (%)
88.2
Duplicates removed (%)
42.4
Number of peaks
743 (qval < 1E-05)

Base call quality data from DBCLS SRA