SRX055355
GSM699736: Input HCT116-WT TNFa-treatment rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
human colorectal carcinoma cell line HCT116
genotype/variation
Wild type
cell line
HCT116
stimulation
TNF-alpha
chip antibody
none
alignment program
ELAND

Sequenced DNA Library

library_name
GSM699736: Input_HCT116-WT_TNFa-treatment_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35456578
Reads aligned (%)
81.2
Duplicates removed (%)
2.6
Number of peaks
760 (qval < 1E-05)

hg19

Number of total reads
35456578
Reads aligned (%)
80.6
Duplicates removed (%)
3.5
Number of peaks
1085 (qval < 1E-05)

Base call quality data from DBCLS SRA