SRX055346
GSM699727: HP1-gamma HCT116-WT rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CBX3

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
human colorectal carcinoma cell line HCT116
genotype/variation
Wild type
cell line
HCT116
stimulation
none
chip antibody
HP1 gamma
antibody vendor
Millipore
antibody catalog number
05-690
antibody lot numbers
1501782 and 17908001
alignment program
ELAND

Sequenced DNA Library

library_name
GSM699727: HP1-gamma_HCT116-WT_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45123037
Reads aligned (%)
59.5
Duplicates removed (%)
7.1
Number of peaks
1861 (qval < 1E-05)

hg19

Number of total reads
45123037
Reads aligned (%)
59.3
Duplicates removed (%)
7.4
Number of peaks
1925 (qval < 1E-05)

Base call quality data from DBCLS SRA