Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5B

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Chromatin IP against PLU1
cell line
MCF7
cell type
breast adenocarcinoma cells
cell differnetiation protocol
MCF7 [vehicle]
cell treatment
Cells were hormone-deprived for at least 3 days and then treated with vehicle for 45 minutes.
chip antibody
4439 (Anti-JARID1B antibody, ABE239, EMD Millipore)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
19932048
Reads aligned (%)
90.3
Duplicates removed (%)
2.4
Number of peaks
753 (qval < 1E-05)

hg38

Number of total reads
19932048
Reads aligned (%)
91.8
Duplicates removed (%)
1.4
Number of peaks
357 (qval < 1E-05)

Base call quality data from DBCLS SRA