Antigen

Antigen Class

TFs and others

Antigen

KDM5B

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

Chromatin IP against PLU1

cell line

MCF7

cell type

breast adenocarcinoma cells

cell differnetiation protocol

MCF7 [vehicle]

cell treatment

Cells were hormone-deprived for at least 3 days and then treated with vehicle for 45 minutes.

chip antibody

4439 (Anti-JARID1B antibody, ABE239, EMD Millipore)

Sequenced DNA Library

library_name

GSM700758: PLU1_ChIPSeq

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg19

Number of total reads

19932048

Reads aligned (%)

90.3

Duplicates removed (%)

2.4

Number of peaks

753 (qval < 1E-05)

hg38

Number of total reads

19932048

Reads aligned (%)

91.8

Duplicates removed (%)

1.4

Number of peaks

357 (qval < 1E-05)