Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: KDM5B
wikigenes
PDBj
CellType: MCF-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX055312
GSM700758: PLU1 ChIPSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
KDM5B
Cell type
Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
Chromatin IP against PLU1
cell line
MCF7
cell type
breast adenocarcinoma cells
cell differnetiation protocol
MCF7 [vehicle]
cell treatment
Cells were hormone-deprived for at least 3 days and then treated with vehicle for 45 minutes.
chip antibody
4439 (Anti-JARID1B antibody, ABE239, EMD Millipore)
Sequenced DNA Library
library_name
GSM700758: PLU1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
19932048
Reads aligned (%)
93.1
Duplicates removed (%)
1.4
Number of peaks
357 (qval < 1E-05)
hg19
Number of total reads
19932048
Reads aligned (%)
92.5
Duplicates removed (%)
2.4
Number of peaks
753 (qval < 1E-05)
Base call quality data from
DBCLS SRA