Antigen

Antigen Class

TFs and others

Antigen

KDM5B

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

Chromatin IP against RBP2

cell line

MCF7

cell type

breast adenocarcinoma cells

cell differnetiation protocol

MCF7 [ER-treated]

cell treatment

Cells were hormone-deprived for at least 3 days and then treated with 100 nM 17β-estradiol (Sigma) for 45 minutes.

chip antibody

2469 (non-commercial, unpublished)

Sequenced DNA Library

library_name

GSM700757: RBP2_E2_ChIPSeq_2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg19

Number of total reads

19798792

Reads aligned (%)

94.2

Duplicates removed (%)

2.2

Number of peaks

1413 (qval < 1E-05)

hg38

Number of total reads

19798792

Reads aligned (%)

95.9

Duplicates removed (%)

1.2

Number of peaks

1330 (qval < 1E-05)