SRX055308
GSM700754: RBP2 ChIPSeq 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5B

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Chromatin IP against RBP2
cell line
MCF7
cell type
breast adenocarcinoma cells
cell differnetiation protocol
MCF7 [vehicle]
cell treatment
Cells were hormone-deprived for at least 3 days and then treated with vehicle for 45 minutes.
chip antibody
2469 (non-commercial, unpublished)

Sequenced DNA Library

library_name
GSM700754: RBP2_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18612060
Reads aligned (%)
88.8
Duplicates removed (%)
1.7
Number of peaks
3463 (qval < 1E-05)

hg19

Number of total reads
18612060
Reads aligned (%)
88.2
Duplicates removed (%)
2.6
Number of peaks
3634 (qval < 1E-05)

Base call quality data from DBCLS SRA