Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
input DNA
cell line
U937
cell type
diffuse histiocytic lymphoma cells
cell differentiation protocol
differentiated with TPA for 96 hours
chip antibody
none

Sequenced DNA Library

library_name
GSM700540: U927_input_gDNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
6903913
Reads aligned (%)
94.1
Duplicates removed (%)
3.7
Number of peaks
60 (qval < 1E-05)

hg19

Number of total reads
6903913
Reads aligned (%)
93.2
Duplicates removed (%)
4.3
Number of peaks
80 (qval < 1E-05)

Base call quality data from DBCLS SRA