Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5B

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
Chromatin IP against RBP2 Large isoform
cell line
U937
cell type
diffuse histiocytic lymphoma cells
cell differentiation protocol
differentiated with TPA for 96 hours
chip antibody
2471(Klose et al.,Cell 128:889-900)

Sequenced DNA Library

library_name
GSM700539: RBP2L_ChIPSeq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
12124576
Reads aligned (%)
81.9
Duplicates removed (%)
4.0
Number of peaks
859 (qval < 1E-05)

hg38

Number of total reads
12124576
Reads aligned (%)
83.8
Duplicates removed (%)
2.6
Number of peaks
573 (qval < 1E-05)

Base call quality data from DBCLS SRA