Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5B

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
Chromatin IP against RBP2
cell line
U937
cell type
diffuse histiocytic lymphoma cells
cell differentiation protocol
differentiated with TPA for 96 hours
chip antibody
2469(non-commercial, unpublished)

Sequenced DNA Library

library_name
GSM700537: RBP2All_ChIPSeq_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
11495580
Reads aligned (%)
73.9
Duplicates removed (%)
3.1
Number of peaks
3059 (qval < 1E-05)

hg38

Number of total reads
11495580
Reads aligned (%)
74.9
Duplicates removed (%)
2.5
Number of peaks
2933 (qval < 1E-05)

Base call quality data from DBCLS SRA