Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5B

Cell type

Cell type Class
Blood
Cell type
U-937
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell

Attributes by original data submitter

Sample

source_name
Chromatin IP against RBP2
cell line
U937
cell type
diffuse histiocytic lymphoma cells
cell differentiation protocol
differentiated with TPA for 96 hours
chip antibody
2469(non-commercial, unpublished)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
12634777
Reads aligned (%)
82.2
Duplicates removed (%)
2.9
Number of peaks
1069 (qval < 1E-05)

hg38

Number of total reads
12634777
Reads aligned (%)
83.9
Duplicates removed (%)
1.8
Number of peaks
934 (qval < 1E-05)

Base call quality data from DBCLS SRA