Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD4+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD4 Primary Cells
MARKERS
CD4+
DONOR_ID
RO 01701
DONOR_AGE
year 37
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Hispanic
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000492

Sequenced DNA Library

library_name
DS17881
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
37357732
Reads aligned (%)
89.3
Duplicates removed (%)
30.9
Number of peaks
51870 (qval < 1E-05)

hg19

Number of total reads
37357732
Reads aligned (%)
89.0
Duplicates removed (%)
31.6
Number of peaks
51822 (qval < 1E-05)

Base call quality data from DBCLS SRA