SRX055190
Chromatin accessibility assay of CD3 Primary Cells, cord blood

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD3+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD3 Primary Cells
MARKERS
CD3
DONOR_ID
CB6 1-4-2011
DONOR_AGE
NA
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Unknown
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000084

Sequenced DNA Library

library_name
DS17706
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27527646
Reads aligned (%)
93.6
Duplicates removed (%)
16.1
Number of peaks
46113 (qval < 1E-05)

hg19

Number of total reads
27527646
Reads aligned (%)
92.8
Duplicates removed (%)
18.0
Number of peaks
46000 (qval < 1E-05)

Base call quality data from DBCLS SRA