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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: Thymus
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX055177
Chromatin accessibility assay of Fetal Thymus
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Blood
Cell type
Thymus
NA
NA
Attributes by original data submitter
Sample
MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Thymus
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23833
DONOR_AGE
day 113
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002370
Sequenced DNA Library
library_name
DS17474
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
47600989
Reads aligned (%)
97.8
Duplicates removed (%)
6.9
Number of peaks
36469 (qval < 1E-05)
hg19
Number of total reads
47600989
Reads aligned (%)
97.1
Duplicates removed (%)
8.5
Number of peaks
36458 (qval < 1E-05)
Base call quality data from
DBCLS SRA