Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Thymus
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23833
DONOR_AGE
day 113
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002370

Sequenced DNA Library

library_name
DS17474
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
47600989
Reads aligned (%)
97.8
Duplicates removed (%)
6.9
Number of peaks
36469 (qval < 1E-05)

hg19

Number of total reads
47600989
Reads aligned (%)
97.1
Duplicates removed (%)
8.5
Number of peaks
36458 (qval < 1E-05)

Base call quality data from DBCLS SRA