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For hg38
BigWig
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: Spleen
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX055173
Chromatin accessibility assay of Fetal Spleen
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Others
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.
Attributes by original data submitter
Sample
MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Spleen
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23399
DONOR_AGE
day 112
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Unknown
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002106
Sequenced DNA Library
library_name
DS17448
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
34922519
Reads aligned (%)
97.2
Duplicates removed (%)
7.9
Number of peaks
46713 (qval < 1E-05)
hg19
Number of total reads
34922519
Reads aligned (%)
96.4
Duplicates removed (%)
9.4
Number of peaks
46289 (qval < 1E-05)
Base call quality data from
DBCLS SRA