Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Spleen
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23399
DONOR_AGE
day 112
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Unknown
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002106

Sequenced DNA Library

library_name
DS17448
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
34922519
Reads aligned (%)
97.2
Duplicates removed (%)
7.9
Number of peaks
46713 (qval < 1E-05)

hg19

Number of total reads
34922519
Reads aligned (%)
96.4
Duplicates removed (%)
9.4
Number of peaks
46289 (qval < 1E-05)

Base call quality data from DBCLS SRA