Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD56+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD56 Primary Cells
MARKERS
CD56+
DONOR_ID
RO 01701
DONOR_AGE
year 37
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Hispanic
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000623

Sequenced DNA Library

library_name
DS17443
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
35539640
Reads aligned (%)
97.5
Duplicates removed (%)
6.7
Number of peaks
28980 (qval < 1E-05)

hg19

Number of total reads
35539640
Reads aligned (%)
96.7
Duplicates removed (%)
8.5
Number of peaks
28955 (qval < 1E-05)

Base call quality data from DBCLS SRA