Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Intestine, Small
MeSH Description
The portion of the GASTROINTESTINAL TRACT between the PYLORUS of the STOMACH and the ILEOCECAL VALVE of the LARGE INTESTINE. It is divisible into three portions: the DUODENUM, the JEJUNUM, and the ILEUM.

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Intestine, Small
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23808
DONOR_AGE
day 115
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002108

Sequenced DNA Library

library_name
DS17425
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
36413858
Reads aligned (%)
95.9
Duplicates removed (%)
15.6
Number of peaks
42740 (qval < 1E-05)

hg19

Number of total reads
36413858
Reads aligned (%)
95.4
Duplicates removed (%)
16.7
Number of peaks
42737 (qval < 1E-05)

Base call quality data from DBCLS SRA