Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD20+
Tissue
blood
Lineage
mesoderm
Description
B cells from donors RO01778 and RO01794, newly promoted to tier 2: not in 2011 analysis

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD20 Primary Cells
MARKERS
CD20+
DONOR_ID
RO 01778
DONOR_AGE
year 43
DONOR_HEALTH_STATUS
NA
DONOR_SEX
female
DONOR_ETHNICITY
Caucasian
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000236

Sequenced DNA Library

library_name
DS17371
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
35823642
Reads aligned (%)
97.6
Duplicates removed (%)
7.0
Number of peaks
59714 (qval < 1E-05)

hg19

Number of total reads
35823642
Reads aligned (%)
97.0
Duplicates removed (%)
8.1
Number of peaks
59393 (qval < 1E-05)

Base call quality data from DBCLS SRA