SRX055112
GSM700560: InputDNA scramble

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells
cell line
BayGenomics gene trap line XG122
genotype
Suz12^Suz12TAP/+
chip antibody
none
knockdown
scramble

Sequenced DNA Library

library_name
GSM700560: InputDNA scramble
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21899220
Reads aligned (%)
65.2
Duplicates removed (%)
37.7
Number of peaks
611 (qval < 1E-05)

mm9

Number of total reads
21899220
Reads aligned (%)
65.1
Duplicates removed (%)
37.9
Number of peaks
612 (qval < 1E-05)

Base call quality data from DBCLS SRA