SRX055111
GSM700559: InputDNA Pcl3-shRNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells
cell line
BayGenomics gene trap line XG122
genotype
Suz12^Suz12TAP/+
chip antibody
none
knockdown
Pcl3-shRNA6

Sequenced DNA Library

library_name
GSM700559: InputDNA Pcl3-shRNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24611902
Reads aligned (%)
74.7
Duplicates removed (%)
33.2
Number of peaks
562 (qval < 1E-05)

mm9

Number of total reads
24611902
Reads aligned (%)
74.6
Duplicates removed (%)
33.3
Number of peaks
586 (qval < 1E-05)

Base call quality data from DBCLS SRA