SRX055109
GSM700557: InputDNA Pcl3-shRNA7

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells
cell line
E14 ESC
genotype
Pcl3-TAP and Pcl3-wildtype-shRNA7
chip antibody
none
knockdown
Pcl3-shRNA7

Sequenced DNA Library

library_name
GSM700557: InputDNA Pcl3-shRNA7
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26905744
Reads aligned (%)
93.8
Duplicates removed (%)
9.4
Number of peaks
740 (qval < 1E-05)

mm9

Number of total reads
26905744
Reads aligned (%)
93.7
Duplicates removed (%)
9.5
Number of peaks
811 (qval < 1E-05)

Base call quality data from DBCLS SRA