SRX054577
GSM699990: Input MCF7 stables ChIP-seq rep1a

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast adenocarcinoma cell line
cell type
MCF7 cell line stably expressing HA ER E2F1ΔC mutant
harvest date
2009-04-02
chip antibody
N/A

Sequenced DNA Library

library_name
GSM699990: Input_MCF7 stables_ChIP-seq_rep1a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6681805
Reads aligned (%)
91.0
Duplicates removed (%)
1.9
Number of peaks
67 (qval < 1E-05)

hg19

Number of total reads
6681805
Reads aligned (%)
90.4
Duplicates removed (%)
2.4
Number of peaks
90 (qval < 1E-05)

Base call quality data from DBCLS SRA