SRX054575
GSM699988: HA ER E2F1ΔN/C MCF7 stables ChIP-seq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast adenocarcinoma cell line
cell type
MCF7 cell line stably expressing HA ER E2F1ΔN/C mutant
harvest date
2009-12-22
chip antibody
mouse anti-HA (Covance, catalog # MMS-101P)

Sequenced DNA Library

library_name
GSM699988: HA ER E2F1ΔN/C_MCF7 stables_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42116075
Reads aligned (%)
51.5
Duplicates removed (%)
6.0
Number of peaks
33565 (qval < 1E-05)

hg19

Number of total reads
42116075
Reads aligned (%)
51.1
Duplicates removed (%)
6.9
Number of peaks
33451 (qval < 1E-05)

Base call quality data from DBCLS SRA