SRX054457
GSM700469: LXR ChIP-seq vehicle treated

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR1H3

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 cells
cell_line
THP-1
treatment
vehicle
antibody
LXR

Sequenced DNA Library

library_name
GSM700469: LXR ChIP-seq vehicle treated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18649666
Reads aligned (%)
96.3
Duplicates removed (%)
8.5
Number of peaks
800 (qval < 1E-05)

hg19

Number of total reads
18649666
Reads aligned (%)
95.4
Duplicates removed (%)
10.2
Number of peaks
988 (qval < 1E-05)

Base call quality data from DBCLS SRA