Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 cells
cell_line
THP-1
treatment
pooled
antibody
IgG

Sequenced DNA Library

library_name
GSM700468: IgG control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
19813432
Reads aligned (%)
95.0
Duplicates removed (%)
23.7
Number of peaks
553 (qval < 1E-05)

hg19

Number of total reads
19813432
Reads aligned (%)
94.2
Duplicates removed (%)
25.4
Number of peaks
783 (qval < 1E-05)

Base call quality data from DBCLS SRA