Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
egl-5
Cell type Class
Larvae
Cell type
L3

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_EGL-5_GFP_L3_rep2 extraction4_seq4 channel_1
strain
OP54(official name : OP54 genotype : unc-119(ed3) III; wgIs54 [unc-119(+) egl-5::TY1::EGFP::3xFLAG] outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The EGL-5::EGFP fusion protein is expressed in the correct egl-5 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the EGL-5 transcription factor. made_by : R. Waterston and S. Kim )
developmental stage
L3
genotype
unc-119(ed3) III; wgIs54 [unc-119(+) egl-5::TY1::EGFP::3xFLAG]
Sex
Hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM700185: Snyder_EGL-5_GFP_L3_rep2 extraction4_seq4 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
4042196
Reads aligned (%)
14.9
Duplicates removed (%)
2.5
Number of peaks
22 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA